INFO: No output directory specified (--dir)
INFO: Using directory: "Supermirror_thin_substrate_20250815_065453"
INFO: Regenerating c-file: Supermirror_thin_substrate.c
DEBUG: CMD: /home/willend/micromamba/bin/mcstas -t -o ./Supermirror_thin_substrate.c Supermirror_thin_substrate.instr
Info:    'SupermirrorFlat' is a contributed component.
Info:    'PSD_Pol_monitor' is a contributed component.
CFLAGS= -DFUNNEL 
/* end of ref-lib.h */
WARNING:
 The parameter side_edge_normal of supermirror1 is initialized 
 using a static {,,,} vector.
  -> Such static vectors support literal numbers ONLY.
  -> Any vector use of variables or defines must happen via a 
     DECLARE/INITIALIZE pointer.


WARNING:
 The parameter side_edge_point of supermirror1 is initialized 
 using a static {,,,} vector.
  -> Such static vectors support literal numbers ONLY.
  -> Any vector use of variables or defines must happen via a 
     DECLARE/INITIALIZE pointer.


-----------------------------------------------------------

Generating single GPU kernel or single CPU section layout: 

-----------------------------------------------------------

Generating GPU/CPU -DFUNNEL layout:
Component supermirror1 is NOACC, CPUONLY=1
-> FUNNEL mode enabled, SPLIT within buffer.
-> CPU section from component supermirror1
-> GPU kernel from component Move

-----------------------------------------------------------
DEBUG: CMD: /home/willend/micromamba/bin/mcstas finished
INFO: Linting generated code: ./Supermirror_thin_substrate.c
DEBUG: CMD: cppcheck ./Supermirror_thin_substrate.c --check-level=exhaustive --force -DMCDEFAULT_NCOUNT=1000000 -UMC_PORTABLE -DND_BUFFER=10000000 -UNOABSORB_INF_NAN -UOMPI_MPI_H -DSIGABRT -DSIGBREAK -DSIGBUS -DSIGPE -DSIGHUP -DSIGILL -DSIGINT -DSIGKILL -DSIGUSR1 -DSIGUSR2 -DSIGPIPE -DSIGQUIT -DSIGSEGV -DSIGTRAP -DSIGURG -DSIGFPE -DSIGKILL -DSIGTERM -UTEST -UUSE_OPENCL -UWIN32 -UOPENACC -UGCCOFFLOAD -U_MSC_VER -U_MSC_EXTENSIONS -U_WIN32 -UWIN32 -D__unix__ -UDANSE -UFUNNEL -UMC_ANCIENT_COMPATIBILITY -UMC_POL_COMPAT -UNEUTRONICS -Uisnan -Uisinf
Checking Supermirror_thin_substrate.c ...
Checking Supermirror_thin_substrate.c: MCDEFAULT_NCOUNT=1000000;ND_BUFFER=10000000;SIGABRT=1;SIGBREAK=1;SIGBUS=1;SIGPE=1;SIGHUP=1;SIGILL=1;SIGINT=1;SIGKILL=1;SIGUSR1=1;SIGUSR2=1;SIGPIPE=1;SIGQUIT=1;SIGSEGV=1;SIGTRAP=1;SIGURG=1;SIGFPE=1;SIGKILL=1;SIGTERM=1;__unix__=1...
Supermirror_thin_substrate.c:7720:3: error: Found an exit path from function with non-void return type that has missing return statement [missingReturn]
  *dt = -n_dot_dp / n_dot_v;
  ^
Supermirror_thin_substrate.c:9526:4: error: printf format string requires 4 parameters but only 3 are given. [wrongPrintfScanfArgNum]
   printf("%s T_ir_all[+/-] = (% 5f,% 5f %)\n", supermirror_flat_s_prefix,
   ^
Supermirror_thin_substrate.c:9528:4: error: printf format string requires 4 parameters but only 3 are given. [wrongPrintfScanfArgNum]
   printf("%s T_ir_at_ir_order_0[+/-] = (% 5f,% 5f %)\n", supermirror_flat_s_prefix,
   ^
Supermirror_thin_substrate.c:9714:3: error: printf format string requires 1 parameter but only 0 are given. [wrongPrintfScanfArgNum]
  MPI_MASTER(printf( "set_supermirror_flat_geometry: ERROR tilt_y_axis_location=\"%s\" must be one of the following\n"
  ^
Supermirror_thin_substrate.c:8072:14: warning: If memory allocation fails, then there is a possible null pointer dereference: fn [nullPointerOutOfMemory]
  a->fn[i] = fn[i];
             ^
Supermirror_thin_substrate.c:8024:13: note: Assuming allocation function fails
 fn = calloc(nf_in, sizeof(Coords));
            ^
Supermirror_thin_substrate.c:8024:13: note: Assignment 'fn=calloc(nf_in,sizeof(struct Coords))', assigned value is 0
 fn = calloc(nf_in, sizeof(Coords));
            ^
Supermirror_thin_substrate.c:8064:9: note: Assuming condition is false
 if (nf < 4) {
        ^
Supermirror_thin_substrate.c:8072:14: note: Null pointer dereference
  a->fn[i] = fn[i];
             ^
Supermirror_thin_substrate.c:8073:14: warning: If memory allocation fails, then there is a possible null pointer dereference: fp [nullPointerOutOfMemory]
  a->fp[i] = fp[i];
             ^
Supermirror_thin_substrate.c:8025:13: note: Assuming allocation function fails
 fp = calloc(nf_in, sizeof(Coords));
            ^
Supermirror_thin_substrate.c:8025:13: note: Assignment 'fp=calloc(nf_in,sizeof(struct Coords))', assigned value is 0
 fp = calloc(nf_in, sizeof(Coords));
            ^
Supermirror_thin_substrate.c:8064:9: note: Assuming condition is false
 if (nf < 4) {
        ^
Supermirror_thin_substrate.c:8073:14: note: Null pointer dereference
  a->fp[i] = fp[i];
             ^
Supermirror_thin_substrate.c:8094:3: warning: If memory allocation fails, then there is a possible null pointer dereference: ifvi [nullPointerOutOfMemory]
  ifvi[i] = calloc(nv, sizeof(int));
  ^
Supermirror_thin_substrate.c:8092:15: note: Assuming allocation function fails
 ifvi = calloc(nf, sizeof(int*));
              ^
Supermirror_thin_substrate.c:8092:15: note: Assignment 'ifvi=calloc(nf,sizeof(int*))', assigned value is 0
 ifvi = calloc(nf, sizeof(int*));
              ^
Supermirror_thin_substrate.c:8094:3: note: Null pointer dereference
  ifvi[i] = calloc(nv, sizeof(int));
  ^
Supermirror_thin_substrate.c:8171:12: warning: If memory allocation fails, then there is a possible null pointer dereference: eliminate_list [nullPointerOutOfMemory]
       if (eliminate_list[m-1]) {
           ^
Supermirror_thin_substrate.c:8169:37: note: Assuming allocation function fails
      eliminate_list = (int *)calloc(m, sizeof(int)); //initialise with 0 = not eliminate assocated vertex reference
                                    ^
Supermirror_thin_substrate.c:8169:24: note: Assignment 'eliminate_list=(int*)calloc(m,sizeof(int))', assigned value is 0
      eliminate_list = (int *)calloc(m, sizeof(int)); //initialise with 0 = not eliminate assocated vertex reference
                       ^
Supermirror_thin_substrate.c:8171:12: note: Null pointer dereference
       if (eliminate_list[m-1]) {
           ^
Supermirror_thin_substrate.c:8176:12: warning: If memory allocation fails, then there is a possible null pointer dereference: eliminate_list [nullPointerOutOfMemory]
       if (eliminate_list[l]) {
           ^
Supermirror_thin_substrate.c:8169:37: note: Assuming allocation function fails
      eliminate_list = (int *)calloc(m, sizeof(int)); //initialise with 0 = not eliminate assocated vertex reference
                                    ^
Supermirror_thin_substrate.c:8169:24: note: Assignment 'eliminate_list=(int*)calloc(m,sizeof(int))', assigned value is 0
      eliminate_list = (int *)calloc(m, sizeof(int)); //initialise with 0 = not eliminate assocated vertex reference
                       ^
Supermirror_thin_substrate.c:8171:26: note: Assuming condition is false
       if (eliminate_list[m-1]) {
                         ^
Supermirror_thin_substrate.c:8176:12: note: Null pointer dereference
       if (eliminate_list[l]) {
           ^
Supermirror_thin_substrate.c:8265:4: warning: If memory allocation fails, then there is a possible null pointer dereference: iA [nullPointerOutOfMemory]
   iA[0].index = k;
   ^
Supermirror_thin_substrate.c:8262:15: note: Assuming allocation function fails
   iA = calloc(nfvi[i], sizeof(PolyhedronIndexValuePair));
              ^
Supermirror_thin_substrate.c:8262:15: note: Assignment 'iA=calloc(nfvi[i],sizeof(struct PolyhedronIndexValuePair))', assigned value is 0
   iA = calloc(nfvi[i], sizeof(PolyhedronIndexValuePair));
              ^
Supermirror_thin_substrate.c:8265:4: note: Null pointer dereference
   iA[0].index = k;
   ^
Supermirror_thin_substrate.c:8266:4: warning: If memory allocation fails, then there is a possible null pointer dereference: iA [nullPointerOutOfMemory]
   iA[0].value = -2; //ensure the starting point stays the first point.
   ^
Supermirror_thin_substrate.c:8262:15: note: Assuming allocation function fails
   iA = calloc(nfvi[i], sizeof(PolyhedronIndexValuePair));
              ^
Supermirror_thin_substrate.c:8262:15: note: Assignment 'iA=calloc(nfvi[i],sizeof(struct PolyhedronIndexValuePair))', assigned value is 0
   iA = calloc(nfvi[i], sizeof(PolyhedronIndexValuePair));
              ^
Supermirror_thin_substrate.c:8266:4: note: Null pointer dereference
   iA[0].value = -2; //ensure the starting point stays the first point.
   ^
Supermirror_thin_substrate.c:8271:4: warning: If memory allocation fails, then there is a possible null pointer dereference: iA [nullPointerOutOfMemory]
   iA[1].index = k;
   ^
Supermirror_thin_substrate.c:8262:15: note: Assuming allocation function fails
   iA = calloc(nfvi[i], sizeof(PolyhedronIndexValuePair));
              ^
Supermirror_thin_substrate.c:8262:15: note: Assignment 'iA=calloc(nfvi[i],sizeof(struct PolyhedronIndexValuePair))', assigned value is 0
   iA = calloc(nfvi[i], sizeof(PolyhedronIndexValuePair));
              ^
Supermirror_thin_substrate.c:8271:4: note: Null pointer dereference
   iA[1].index = k;
   ^
Supermirror_thin_substrate.c:8272:4: warning: If memory allocation fails, then there is a possible null pointer dereference: iA [nullPointerOutOfMemory]
   iA[1].value = 1; //angle between the line from first to second point and the reference line is 0, i.e. cosA = 1
   ^
Supermirror_thin_substrate.c:8262:15: note: Assuming allocation function fails
   iA = calloc(nfvi[i], sizeof(PolyhedronIndexValuePair));
              ^
Supermirror_thin_substrate.c:8262:15: note: Assignment 'iA=calloc(nfvi[i],sizeof(struct PolyhedronIndexValuePair))', assigned value is 0
   iA = calloc(nfvi[i], sizeof(PolyhedronIndexValuePair));
              ^
Supermirror_thin_substrate.c:8272:4: note: Null pointer dereference
   iA[1].value = 1; //angle between the line from first to second point and the reference line is 0, i.e. cosA = 1
   ^
Supermirror_thin_substrate.c:8286:10: warning: If memory allocation fails, then there is a possible null pointer dereference: iA [nullPointerOutOfMemory]
   qsort(iA, nfvi[i], sizeof(iA[0]), polyhedron_qsort_compare_func);
         ^
Supermirror_thin_substrate.c:8262:15: note: Assuming allocation function fails
   iA = calloc(nfvi[i], sizeof(PolyhedronIndexValuePair));
              ^
Supermirror_thin_substrate.c:8262:15: note: Assignment 'iA=calloc(nfvi[i],sizeof(struct PolyhedronIndexValuePair))', assigned value is 0
   iA = calloc(nfvi[i], sizeof(PolyhedronIndexValuePair));
              ^
Supermirror_thin_substrate.c:8286:10: note: Null pointer dereference
   qsort(iA, nfvi[i], sizeof(iA[0]), polyhedron_qsort_compare_func);
         ^
Supermirror_thin_substrate.c:8292:26: warning: If memory allocation fails, then there is a possible null pointer dereference: iA [nullPointerOutOfMemory]
    a->afvi[i].ifvi[j] = iA[j].index;
                         ^
Supermirror_thin_substrate.c:8262:15: note: Assuming allocation function fails
   iA = calloc(nfvi[i], sizeof(PolyhedronIndexValuePair));
              ^
Supermirror_thin_substrate.c:8262:15: note: Assignment 'iA=calloc(nfvi[i],sizeof(struct PolyhedronIndexValuePair))', assigned value is 0
   iA = calloc(nfvi[i], sizeof(PolyhedronIndexValuePair));
              ^
Supermirror_thin_substrate.c:8292:26: note: Null pointer dereference
    a->afvi[i].ifvi[j] = iA[j].index;
                         ^
Supermirror_thin_substrate.c:9177:25: warning: If memory allocation fails, then there is a possible null pointer dereference: *out [nullPointerOutOfMemory]
    for(i=0; i<n; i++) (*out)[i]= in[i]>='A'&&in[i]<='Z' ? in[i]|0x60 : in[i]; //convert to lower case
                        ^
Supermirror_thin_substrate.c:9176:23: note: Assuming allocation function fails
    *out=(char*)calloc(n+1,sizeof(char));
                      ^
Supermirror_thin_substrate.c:9176:10: note: Assignment '*out=(char*)calloc(n+1,sizeof(char))', assigned value is 0
    *out=(char*)calloc(n+1,sizeof(char));
         ^
Supermirror_thin_substrate.c:9177:25: note: Null pointer dereference
    for(i=0; i<n; i++) (*out)[i]= in[i]>='A'&&in[i]<='Z' ? in[i]|0x60 : in[i]; //convert to lower case
                        ^
Supermirror_thin_substrate.c:12283:10: warning: If memory allocation fails, then there is a possible null pointer dereference: lc [nullPointerOutOfMemory]
  strcpy(lc,"bothnotcoated");
         ^
Supermirror_thin_substrate.c:12282:21: note: Assuming allocation function fails
  lc = (char*)calloc(14, sizeof(char));
                    ^
Supermirror_thin_substrate.c:12282:8: note: Assignment 'lc=(char*)calloc(14,sizeof(char))', assigned value is 0
  lc = (char*)calloc(14, sizeof(char));
       ^
Supermirror_thin_substrate.c:12283:10: note: Null pointer dereference
  strcpy(lc,"bothnotcoated");
         ^
Supermirror_thin_substrate.c:12285:13: warning: If memory allocation fails, then there is a possible null pointer dereference: lc [nullPointerOutOfMemory]
 if (strcmp(lc,"bothcoated") == 0) {
            ^
Supermirror_thin_substrate.c:12282:21: note: Assuming allocation function fails
  lc = (char*)calloc(14, sizeof(char));
                    ^
Supermirror_thin_substrate.c:12282:8: note: Assignment 'lc=(char*)calloc(14,sizeof(char))', assigned value is 0
  lc = (char*)calloc(14, sizeof(char));
       ^
Supermirror_thin_substrate.c:12285:13: note: Null pointer dereference
 if (strcmp(lc,"bothcoated") == 0) {
            ^
Supermirror_thin_substrate.c:9363:36: error: Uninitialized variable: supermirror_flat_s_prefix [uninitvar]
 printf("%s sm_print_state: %s\n", supermirror_flat_s_prefix, subheader);
                                   ^
Supermirror_thin_substrate.c:12576:2: error: Uninitialized variable: i [uninitvar]
 MPI_MASTER (
 ^
Checking Supermirror_thin_substrate.c: MCDEFAULT_NCOUNT=1000000;ND_BUFFER=10000000;SIGABRT=1;SIGBREAK=1;SIGBUS=1;SIGPE=1;SIGHUP=1;SIGILL=1;SIGINT=1;SIGKILL=1;SIGUSR1=1;SIGUSR2=1;SIGPIPE=1;SIGQUIT=1;SIGSEGV=1;SIGTRAP=1;SIGURG=1;SIGFPE=1;SIGKILL=1;SIGTERM=1;__unix__=1;MULTICORE...
Checking Supermirror_thin_substrate.c: MCDEFAULT_NCOUNT=1000000;ND_BUFFER=10000000;SIGABRT=1;SIGBREAK=1;SIGBUS=1;SIGPE=1;SIGHUP=1;SIGILL=1;SIGINT=1;SIGKILL=1;SIGUSR1=1;SIGUSR2=1;SIGPIPE=1;SIGQUIT=1;SIGSEGV=1;SIGTRAP=1;SIGURG=1;SIGFPE=1;SIGKILL=1;SIGTERM=1;__unix__=1;SIGKILL;SIGUSR1;SIGUSR2...
Checking Supermirror_thin_substrate.c: MCDEFAULT_NCOUNT=1000000;ND_BUFFER=10000000;SIGABRT=1;SIGBREAK=1;SIGBUS=1;SIGPE=1;SIGHUP=1;SIGILL=1;SIGINT=1;SIGKILL=1;SIGUSR1=1;SIGUSR2=1;SIGPIPE=1;SIGQUIT=1;SIGSEGV=1;SIGTRAP=1;SIGURG=1;SIGFPE=1;SIGKILL=1;SIGTERM=1;__unix__=1;USE_MPI...
Checking Supermirror_thin_substrate.c: MCDEFAULT_NCOUNT=1000000;ND_BUFFER=10000000;SIGABRT=1;SIGBREAK=1;SIGBUS=1;SIGPE=1;SIGHUP=1;SIGILL=1;SIGINT=1;SIGKILL=1;SIGUSR1=1;SIGUSR2=1;SIGPIPE=1;SIGQUIT=1;SIGSEGV=1;SIGTRAP=1;SIGURG=1;SIGFPE=1;SIGKILL=1;SIGTERM=1;__unix__=1;USE_MPI;USE_NEXUS...
Checking Supermirror_thin_substrate.c: MCDEFAULT_NCOUNT=1000000;ND_BUFFER=10000000;SIGABRT=1;SIGBREAK=1;SIGBUS=1;SIGPE=1;SIGHUP=1;SIGILL=1;SIGINT=1;SIGKILL=1;SIGUSR1=1;SIGUSR2=1;SIGPIPE=1;SIGQUIT=1;SIGSEGV=1;SIGTRAP=1;SIGURG=1;SIGFPE=1;SIGKILL=1;SIGTERM=1;__unix__=1;USE_NEXUS...
Checking Supermirror_thin_substrate.c: MCDEFAULT_NCOUNT=1000000;ND_BUFFER=10000000;SIGABRT=1;SIGBREAK=1;SIGBUS=1;SIGPE=1;SIGHUP=1;SIGILL=1;SIGINT=1;SIGKILL=1;SIGUSR1=1;SIGUSR2=1;SIGPIPE=1;SIGQUIT=1;SIGSEGV=1;SIGTRAP=1;SIGURG=1;SIGFPE=1;SIGKILL=1;SIGTERM=1;__unix__=1;__APPLE__;__GNUC__...
Checking Supermirror_thin_substrate.c: MCDEFAULT_NCOUNT=1000000;ND_BUFFER=10000000;SIGABRT=1;SIGBREAK=1;SIGBUS=1;SIGPE=1;SIGHUP=1;SIGILL=1;SIGINT=1;SIGKILL=1;SIGUSR1=1;SIGUSR2=1;SIGPIPE=1;SIGQUIT=1;SIGSEGV=1;SIGTRAP=1;SIGURG=1;SIGFPE=1;SIGKILL=1;SIGTERM=1;__unix__=1;__APPLE__;__unix__...
Checking Supermirror_thin_substrate.c: MCDEFAULT_NCOUNT=1000000;ND_BUFFER=10000000;SIGABRT=1;SIGBREAK=1;SIGBUS=1;SIGPE=1;SIGHUP=1;SIGILL=1;SIGINT=1;SIGKILL=1;SIGUSR1=1;SIGUSR2=1;SIGPIPE=1;SIGQUIT=1;SIGSEGV=1;SIGTRAP=1;SIGURG=1;SIGFPE=1;SIGKILL=1;SIGTERM=1;__unix__=1;__FreeBSD__...
Checking Supermirror_thin_substrate.c: MCDEFAULT_NCOUNT=1000000;ND_BUFFER=10000000;SIGABRT=1;SIGBREAK=1;SIGBUS=1;SIGPE=1;SIGHUP=1;SIGILL=1;SIGINT=1;SIGKILL=1;SIGUSR1=1;SIGUSR2=1;SIGPIPE=1;SIGQUIT=1;SIGSEGV=1;SIGTRAP=1;SIGURG=1;SIGFPE=1;SIGKILL=1;SIGTERM=1;__unix__=1;__GNUC__...
Checking Supermirror_thin_substrate.c: MCDEFAULT_NCOUNT=1000000;ND_BUFFER=10000000;SIGABRT=1;SIGBREAK=1;SIGBUS=1;SIGPE=1;SIGHUP=1;SIGILL=1;SIGINT=1;SIGKILL=1;SIGUSR1=1;SIGUSR2=1;SIGPIPE=1;SIGQUIT=1;SIGSEGV=1;SIGTRAP=1;SIGURG=1;SIGFPE=1;SIGKILL=1;SIGTERM=1;__unix__=1;__GNUC__;__clang__...
Checking Supermirror_thin_substrate.c: MCDEFAULT_NCOUNT=1000000;ND_BUFFER=10000000;SIGABRT=1;SIGBREAK=1;SIGBUS=1;SIGPE=1;SIGHUP=1;SIGILL=1;SIGINT=1;SIGKILL=1;SIGUSR1=1;SIGUSR2=1;SIGPIPE=1;SIGQUIT=1;SIGSEGV=1;SIGTRAP=1;SIGURG=1;SIGFPE=1;SIGKILL=1;SIGTERM=1;__unix__=1;__dest_os...
DEBUG: CMD: cppcheck finished
INFO: End of linting ./Supermirror_thin_substrate.c